Rotamerically Induced PerturbationsLarge perturbations
Response to RIP in zf-mimic
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 1FME
column = Cα-RMSD response to a RIP simulation
susceptibility of response to RIP of neighbors
no. of responding residues for each RIP
averaged Cα-RMSD fluctuations above background


Last snapshot of trajectory where Cα-RMSD is indicated by redness and thickness of chain.
GLU-1 [1]
GLN-2 [2]
TYR-3 [3]
THR-4 [4]
LYS-6 [6]
TYR-7 [7]
LYS-8 [8]
ARG-10 [10]
THR-11 [11]
PHE-12 [12]
ARG-13 [13]
ASN-14 [14]
GLU-15 [15]
LYS-16 [16]
GLU-17 [17]
LEU-18 [18]
ARG-19 [19]
ASP-20 [20]
PHE-21 [21]
ILE-22 [22]
GLU-23 [23]
LYS-24 [24]
PHE-25 [25]
LYS-26 [26]
ARG-28 [28]