Response to RIP in ubiquitin
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 1XQQ
column = Cα-RMSD response to a RIP simulation
|
susceptibility of response to RIP of neighbors
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no. of responding residues for each RIP
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averaged Cα-RMSD fluctuations above background
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Last snapshot of trajectory where Cα-RMSD is
indicated by redness and thickness of chain.
MET-1 [1]
GLN-2 [2]
ILE-3 [3]
PHE-4 [4]
VAL-5 [5]
LYS-6 [6]
THR-7 [7]
LEU-8 [8]
THR-9 [9]
LYS-11 [11]
THR-12 [12]
ILE-13 [13]
THR-14 [14]
LEU-15 [15]
GLU-16 [16]
VAL-17 [17]
GLU-18 [18]
SER-20 [20]
ASP-21 [21]
THR-22 [22]
ILE-23 [23]
GLU-24 [24]
ASN-25 [25]
VAL-26 [26]
LYS-27 [27]
LYS-29 [29]
ILE-30 [30]
GLN-31 [31]
ASP-32 [32]
LYS-33 [33]
GLU-34 [34]
ILE-36 [36]
ASP-39 [39]
GLN-40 [40]
GLN-41 [41]
ARG-42 [42]
LEU-43 [43]
ILE-44 [44]
PHE-45 [45]
LYS-48 [48]
GLN-49 [49]
LEU-50 [50]
GLU-51 [51]
ASP-52 [52]
ARG-54 [54]
THR-55 [55]
LEU-56 [56]
SER-57 [57]
ASP-58 [58]
TYR-59 [59]
ASN-60 [60]
ILE-61 [61]
GLN-62 [62]
LYS-63 [63]
GLU-64 [64]
SER-65 [65]
THR-66 [66]
LEU-67 [67]
HIS-68 [68]
LEU-69 [69]
VAL-70 [70]
LEU-71 [71]
ARG-72 [72]
LEU-73 [73]
ARG-74 [74]
