Response to RIP in thyroid-recep
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 1NAV
column = Cα-RMSD response to a RIP simulation
|
susceptibility of response to RIP of neighbors
|
no. of responding residues for each RIP
|
averaged Cα-RMSD fluctuations above background
|
Last snapshot of trajectory where Cα-RMSD is
indicated by redness and thickness of chain.
HIS-1 [146]
MET-2 [147]
GLU-3 [148]
GLU-4 [149]
MET-5 [150]
ILE-6 [151]
ARG-7 [152]
SER-8 [153]
LEU-9 [154]
GLN-10 [155]
GLN-11 [156]
ARG-12 [157]
GLU-14 [159]
THR-16 [161]
GLU-18 [163]
GLU-19 [164]
TRP-20 [165]
ASP-21 [166]
LEU-22 [167]
ILE-23 [168]
HIS-24 [169]
ILE-25 [170]
THR-27 [172]
GLU-28 [173]
HIS-30 [175]
ARG-31 [176]
SER-32 [177]
THR-33 [178]
ASN-34 [179]
LYS-36 [186]
GLN-37 [187]
ARG-38 [188]
ARG-39 [189]
LYS-40 [190]
PHE-41 [191]
LEU-42 [192]
ASP-44 [194]
ASP-45 [195]
ILE-46 [196]
GLN-48 [198]
SER-49 [199]
ASP-51 [206]
ASP-53 [208]
LYS-54 [209]
VAL-55 [210]
ASP-56 [211]
LEU-57 [212]
GLU-58 [213]
PHE-60 [215]
SER-61 [216]
GLU-62 [217]
PHE-63 [218]
THR-64 [219]
LYS-65 [220]
ILE-66 [221]
ILE-67 [222]
THR-68 [223]
ILE-71 [226]
THR-72 [227]
ARG-73 [228]
VAL-74 [229]
VAL-75 [230]
ASP-76 [231]
PHE-77 [232]
LYS-79 [234]
LYS-80 [235]
LEU-81 [236]
MET-83 [238]
PHE-84 [239]
SER-85 [240]
GLU-86 [241]
LEU-87 [242]
CYS-89 [244]
GLU-90 [245]
ASP-91 [246]
GLN-92 [247]
ILE-93 [248]
ILE-94 [249]
LEU-95 [250]
LEU-96 [251]
LYS-97 [252]
CYS-99 [254]
CYS-100 [255]
MET-101 [256]
GLU-102 [257]
ILE-103 [258]
MET-104 [259]
SER-105 [260]
LEU-106 [261]
ARG-107 [262]
VAL-110 [265]
ARG-111 [266]
TYR-112 [267]
ASP-113 [268]
GLU-115 [270]
SER-116 [271]
ASP-117 [272]
THR-118 [273]
LEU-119 [274]
THR-120 [275]
LEU-121 [276]
SER-122 [277]
GLU-124 [279]
MET-125 [280]
VAL-127 [282]
LYS-128 [283]
ARG-129 [284]
GLU-130 [285]
GLN-131 [286]
LEU-132 [287]
LYS-133 [288]
ASN-134 [289]
LEU-137 [292]
VAL-139 [294]
VAL-140 [295]
SER-141 [296]
ASP-142 [297]
ILE-144 [299]
PHE-145 [300]
GLU-146 [301]
LEU-147 [302]
LYS-149 [304]
SER-150 [305]
LEU-151 [306]
SER-152 [307]
PHE-154 [309]
ASN-155 [310]
LEU-156 [311]
ASP-157 [312]
ASP-158 [313]
THR-159 [314]
GLU-160 [315]
VAL-161 [316]
LEU-163 [318]
LEU-164 [319]
GLN-165 [320]
VAL-167 [322]
LEU-168 [323]
LEU-169 [324]
MET-170 [325]
SER-171 [326]
THR-172 [327]
ASP-173 [328]
ARG-174 [329]
SER-175 [330]
LEU-177 [332]
LEU-178 [333]
CYS-179 [334]
VAL-180 [335]
ASP-181 [336]
LYS-182 [337]
ILE-183 [338]
GLU-184 [339]
LYS-185 [340]
SER-186 [341]
GLN-187 [342]
GLU-188 [343]
TYR-190 [345]
LEU-191 [346]
LEU-192 [347]
PHE-194 [349]
GLU-195 [350]
HIS-196 [351]
TYR-197 [352]
VAL-198 [353]
ASN-199 [354]
HIS-200 [355]
ARG-201 [356]
LYS-202 [357]
HIS-203 [358]
ASN-204 [359]
ILE-205 [360]
HIS-207 [362]
PHE-208 [363]
TRP-209 [364]
LYS-211 [366]
LEU-212 [367]
LEU-213 [368]
MET-214 [369]
LYS-215 [370]
VAL-216 [371]
THR-217 [372]
ASP-218 [373]
LEU-219 [374]
ARG-220 [375]
MET-221 [376]
ILE-222 [377]
CYS-225 [380]
HIS-226 [381]
SER-228 [383]
ARG-229 [384]
PHE-230 [385]
LEU-231 [386]
HIS-232 [387]
MET-233 [388]
LYS-234 [389]
VAL-235 [390]
GLU-236 [391]
CYS-237 [392]
THR-239 [394]
GLU-240 [395]
LEU-241 [396]
PHE-242 [397]
LEU-245 [400]
PHE-246 [401]
LEU-247 [402]
GLU-248 [403]
VAL-249 [404]
PHE-250 [405]
GLU-251 [406]
ASP-252 [407]
GLN-253 [408]
