Response to RIP in ptp-pdz2
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 3PDZ
column = Cα-RMSD response to a RIP simulation
|
susceptibility of response to RIP of neighbors
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no. of responding residues for each RIP
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averaged Cα-RMSD fluctuations above background
|
Last snapshot of trajectory where Cα-RMSD is
indicated by redness and thickness of chain.
LYS-2 [2]
ASP-5 [5]
ILE-6 [6]
PHE-7 [7]
GLU-8 [8]
VAL-9 [9]
GLU-10 [10]
LEU-11 [11]
LYS-13 [13]
ASN-14 [14]
ASP-15 [15]
ASN-16 [16]
SER-17 [17]
LEU-18 [18]
ILE-20 [20]
SER-21 [21]
VAL-22 [22]
THR-23 [23]
VAL-26 [26]
ASN-27 [27]
THR-28 [28]
SER-29 [29]
VAL-30 [30]
ARG-31 [31]
HIS-32 [32]
ILE-35 [35]
TYR-36 [36]
VAL-37 [37]
LYS-38 [38]
VAL-40 [40]
ILE-41 [41]
GLN-43 [43]
GLU-47 [47]
SER-48 [48]
ASP-49 [49]
ARG-51 [51]
ILE-52 [52]
HIS-53 [53]
LYS-54 [54]
ASP-56 [56]
ARG-57 [57]
VAL-58 [58]
LEU-59 [59]
VAL-61 [61]
ASN-62 [62]
VAL-64 [64]
SER-65 [65]
LEU-66 [66]
GLU-67 [67]
THR-70 [70]
HIS-71 [71]
LYS-72 [72]
GLN-73 [73]
VAL-75 [75]
GLU-76 [76]
THR-77 [77]
LEU-78 [78]
ARG-79 [79]
ASN-80 [80]
THR-81 [81]
GLN-83 [83]
VAL-84 [84]
VAL-85 [85]
HIS-86 [86]
LEU-87 [87]
LEU-88 [88]
LEU-89 [89]
GLU-90 [90]
LYS-91 [91]
GLN-93 [93]
SER-94 [94]
THR-96 [96]
