Response to RIP in protein-a
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 1BDD
column = Cα-RMSD response to a RIP simulation
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susceptibility of response to RIP of neighbors
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no. of responding residues for each RIP
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averaged Cα-RMSD fluctuations above background
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Last snapshot of trajectory where Cα-RMSD is
indicated by redness and thickness of chain.
THR-1 [1]
ASP-3 [3]
ASN-4 [4]
LYS-5 [5]
PHE-6 [6]
ASN-7 [7]
LYS-8 [8]
GLU-9 [9]
GLN-10 [10]
GLN-11 [11]
ASN-12 [12]
PHE-14 [14]
TYR-15 [15]
GLU-16 [16]
ILE-17 [17]
LEU-18 [18]
HIS-19 [19]
LEU-20 [20]
ASN-22 [22]
LEU-23 [23]
ASN-24 [24]
GLU-25 [25]
GLU-26 [26]
GLN-27 [27]
ARG-28 [28]
ASN-29 [29]
PHE-31 [31]
ILE-32 [32]
GLN-33 [33]
SER-34 [34]
LEU-35 [35]
LYS-36 [36]
ASP-37 [37]
ASP-38 [38]
SER-40 [40]
GLN-41 [41]
SER-42 [42]
ASN-44 [44]
LEU-45 [45]
LEU-46 [46]
GLU-48 [48]
LYS-50 [50]
LYS-51 [51]
LEU-52 [52]
ASN-53 [53]
ASP-54 [54]
GLN-56 [56]
LYS-59 [59]
