Response to RIP in inad-pdz5
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 2QKU
column = Cα-RMSD response to a RIP simulation
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susceptibility of response to RIP of neighbors
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no. of responding residues for each RIP
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averaged Cα-RMSD fluctuations above background
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Last snapshot of trajectory where Cα-RMSD is
indicated by redness and thickness of chain.
LEU-1 [580]
GLU-2 [581]
LYS-3 [582]
PHE-4 [583]
ASN-5 [584]
VAL-6 [585]
ASP-7 [586]
LEU-8 [587]
MET-9 [588]
LYS-10 [589]
LYS-11 [590]
LYS-14 [593]
GLU-15 [594]
LEU-16 [595]
LEU-18 [597]
SER-19 [598]
LEU-20 [599]
SER-21 [600]
ASN-23 [602]
GLU-24 [603]
ILE-25 [604]
CYS-27 [606]
THR-28 [607]
ILE-29 [608]
ASP-31 [610]
LEU-32 [611]
ILE-33 [612]
GLN-34 [613]
GLN-36 [615]
TYR-37 [616]
GLU-39 [618]
ILE-40 [619]
ASP-41 [620]
SER-42 [621]
LYS-43 [622]
LEU-44 [623]
GLN-45 [624]
ARG-46 [625]
ASP-48 [627]
ILE-49 [628]
ILE-50 [629]
THR-51 [630]
LYS-52 [631]
PHE-53 [632]
ASN-54 [633]
ASP-56 [635]
LEU-58 [637]
GLU-59 [638]
LEU-61 [640]
PHE-63 [642]
GLN-64 [643]
VAL-65 [644]
CYS-66 [645]
TYR-67 [646]
LEU-69 [648]
PHE-70 [649]
LYS-71 [650]
ASN-74 [653]
LYS-76 [655]
VAL-77 [656]
SER-78 [657]
MET-79 [658]
GLU-80 [659]
VAL-81 [660]
THR-82 [661]
ARG-83 [662]
LYS-85 [664]
