Rotamerically Induced PerturbationsLarge perturbations
Response to RIP in estrogen-recep
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 1QKU
column = Cα-RMSD response to a RIP simulation
susceptibility of response to RIP of neighbors
no. of responding residues for each RIP
averaged Cα-RMSD fluctuations above background


Last snapshot of trajectory where Cα-RMSD is indicated by redness and thickness of chain.
SER-1 [301]
LYS-2 [302]
LYS-3 [303]
ASN-4 [304]
SER-5 [305]
LEU-6 [306]
LEU-8 [308]
SER-9 [309]
LEU-10 [310]
THR-11 [311]
ASP-13 [313]
GLN-14 [314]
MET-15 [315]
VAL-16 [316]
SER-17 [317]
LEU-19 [319]
LEU-20 [320]
ASP-21 [321]
GLU-23 [323]
ILE-26 [326]
LEU-27 [327]
TYR-28 [328]
SER-29 [329]
GLU-30 [330]
TYR-31 [331]
ASP-32 [332]
THR-34 [334]
ARG-35 [335]
PHE-37 [337]
SER-38 [338]
GLU-39 [339]
SER-41 [341]
MET-42 [342]
MET-43 [343]
LEU-45 [345]
LEU-46 [346]
THR-47 [347]
ASN-48 [348]
LEU-49 [349]
ASP-51 [351]
ARG-52 [352]
GLU-53 [353]
LEU-54 [354]
VAL-55 [355]
HIS-56 [356]
MET-57 [357]
ILE-58 [358]
ASN-59 [359]
TRP-60 [360]
LYS-62 [362]
ARG-63 [363]
VAL-64 [364]
PHE-67 [367]
VAL-68 [368]
ASP-69 [369]
LEU-70 [370]
THR-71 [371]
LEU-72 [372]
HIS-73 [373]
ASP-74 [374]
GLN-75 [375]
VAL-76 [376]
HIS-77 [377]
LEU-78 [378]
LEU-79 [379]
GLU-80 [380]
CYS-81 [381]
TRP-83 [383]
LEU-84 [384]
GLU-85 [385]
ILE-86 [386]
LEU-87 [387]
MET-88 [388]
ILE-89 [389]
LEU-91 [391]
VAL-92 [392]
TRP-93 [393]
ARG-94 [394]
SER-95 [395]
MET-96 [396]
GLU-97 [397]
HIS-98 [398]
LYS-101 [401]
LEU-102 [402]
LEU-103 [403]
PHE-104 [404]
ASN-107 [407]
LEU-108 [408]
LEU-109 [409]
LEU-110 [410]
ASP-111 [411]
ARG-112 [412]
ASN-113 [413]
GLN-114 [414]
LYS-116 [416]
CYS-117 [417]
VAL-118 [418]
GLU-119 [419]
MET-121 [421]
VAL-122 [422]
GLU-123 [423]
ILE-124 [424]
PHE-125 [425]
ASP-126 [426]
MET-127 [427]
LEU-128 [428]
LEU-129 [429]
THR-131 [431]
SER-132 [432]
SER-133 [433]
ARG-134 [434]
PHE-135 [435]
ARG-136 [436]
MET-137 [437]
MET-138 [438]
ASN-139 [439]
LEU-140 [440]
GLN-141 [441]
GLU-143 [443]
GLU-144 [444]
PHE-145 [445]
VAL-146 [446]
CYS-147 [447]
LEU-148 [448]
LYS-149 [449]
SER-150 [450]
ILE-151 [451]
ILE-152 [452]
LEU-153 [453]
LEU-154 [454]
ASN-155 [455]
SER-156 [456]
VAL-158 [458]
TYR-159 [459]
THR-160 [460]
PHE-161 [461]
LEU-162 [462]
SER-163 [463]
SER-164 [464]
THR-165 [465]
LEU-166 [466]
LYS-167 [467]
SER-168 [468]
LEU-169 [469]
GLU-170 [470]
GLU-171 [471]
LYS-172 [472]
ASP-173 [473]
HIS-174 [474]
ILE-175 [475]
HIS-176 [476]
ARG-177 [477]
VAL-178 [478]
LEU-179 [479]
ASP-180 [480]
LYS-181 [481]
ILE-182 [482]
THR-183 [483]
ASP-184 [484]
THR-185 [485]
LEU-186 [486]
ILE-187 [487]
HIS-188 [488]
LEU-189 [489]
MET-190 [490]
LYS-192 [492]
LEU-195 [495]
THR-196 [496]
LEU-197 [497]
GLN-198 [498]
GLN-199 [499]
GLN-200 [500]
HIS-201 [501]
GLN-202 [502]
ARG-203 [503]
LEU-204 [504]
GLN-206 [506]
LEU-207 [507]
LEU-208 [508]
LEU-209 [509]
ILE-210 [510]
LEU-211 [511]
SER-212 [512]
HIS-213 [513]
ILE-214 [514]
ARG-215 [515]
HIS-216 [516]
ASN-219 [519]
LYS-220 [520]
MET-222 [522]
GLU-223 [523]
HIS-224 [524]
LEU-225 [525]
TYR-226 [526]
SER-227 [527]
MET-228 [528]
LYS-229 [529]
CYS-230 [530]
LYS-231 [531]
ASN-232 [532]
VAL-233 [533]
VAL-234 [534]
LEU-236 [536]
TYR-237 [537]
ASP-238 [538]
LEU-239 [539]
LEU-240 [540]
LEU-241 [541]
GLU-242 [542]
MET-243 [543]
LEU-244 [544]
ASP-245 [545]
HIS-247 [547]
ARG-248 [548]
LEU-249 [549]
HIS-250 [550]