Rotamerically Induced PerturbationsLarge perturbations
Response to RIP in adregenic-recep
deviations averaged over the 10th ps of simulation
background temperature = 300k
rotational temperature = 300k
significant response defined by Cα-RMSD deviation > 6 Å
PDB accession code: 2VT4
column = Cα-RMSD response to a RIP simulation
susceptibility of response to RIP of neighbors
no. of responding residues for each RIP
averaged Cα-RMSD fluctuations above background


Last snapshot of trajectory where Cα-RMSD is indicated by redness and thickness of chain.
TRP-1 [40]
GLU-2 [41]
MET-5 [44]
SER-6 [45]
LEU-7 [46]
LEU-8 [47]
MET-9 [48]
LEU-11 [50]
VAL-12 [51]
VAL-13 [52]
LEU-14 [53]
LEU-15 [54]
ILE-16 [55]
VAL-17 [56]
ASN-20 [59]
VAL-21 [60]
LEU-22 [61]
VAL-23 [62]
ILE-24 [63]
ILE-27 [66]
SER-29 [68]
THR-30 [69]
GLN-31 [70]
ARG-32 [71]
LEU-33 [72]
GLN-34 [73]
THR-35 [74]
LEU-36 [75]
THR-37 [76]
ASN-38 [77]
LEU-39 [78]
PHE-40 [79]
ILE-41 [80]
THR-42 [81]
SER-43 [82]
LEU-44 [83]
CYS-46 [85]
ASP-48 [87]
LEU-49 [88]
VAL-50 [89]
VAL-51 [90]
LEU-53 [92]
LEU-54 [93]
VAL-55 [94]
VAL-56 [95]
PHE-58 [97]
THR-61 [100]
LEU-62 [101]
VAL-63 [102]
VAL-64 [103]
ARG-65 [104]
THR-67 [106]
TRP-68 [107]
LEU-69 [108]
TRP-70 [109]
SER-72 [111]
PHE-73 [112]
LEU-74 [113]
CYS-75 [114]
GLU-76 [115]
LEU-77 [116]
TRP-78 [117]
THR-79 [118]
SER-80 [119]
LEU-81 [120]
ASP-82 [121]
VAL-83 [122]
LEU-84 [123]
CYS-85 [124]
VAL-86 [125]
THR-87 [126]
SER-89 [128]
ILE-90 [129]
GLU-91 [130]
THR-92 [131]
LEU-93 [132]
CYS-94 [133]
VAL-95 [134]
ILE-96 [135]
ILE-98 [137]
ASP-99 [138]
ARG-100 [139]
TYR-101 [140]
LEU-102 [141]
ILE-104 [143]
THR-105 [144]
SER-106 [145]
PHE-108 [147]
ARG-109 [148]
TYR-110 [149]
GLN-111 [150]
SER-112 [151]
LEU-113 [152]
MET-114 [153]
THR-115 [154]
ARG-116 [155]
ARG-118 [157]
LYS-120 [159]
VAL-121 [160]
ILE-122 [161]
ILE-123 [162]
CYS-124 [163]
THR-125 [164]
VAL-126 [165]
TRP-127 [166]
ILE-129 [168]
SER-130 [169]
LEU-132 [171]
VAL-133 [172]
SER-134 [173]
PHE-135 [174]
LEU-136 [175]
ILE-138 [177]
MET-139 [178]
MET-140 [179]
HIS-141 [180]
TRP-142 [181]
TRP-143 [182]
ARG-144 [183]
ASP-145 [184]
GLU-146 [185]
ASP-147 [186]
GLN-149 [188]
LEU-151 [190]
LYS-152 [191]
CYS-153 [192]
TYR-154 [193]
GLN-155 [194]
ASP-156 [195]
CYS-159 [198]
CYS-160 [199]
ASP-161 [200]
PHE-162 [201]
VAL-163 [202]
THR-164 [203]
ASN-165 [204]
ARG-166 [205]
TYR-168 [207]
ILE-170 [209]
SER-172 [211]
SER-173 [212]
ILE-174 [213]
ILE-175 [214]
SER-176 [215]
PHE-177 [216]
TYR-178 [217]
ILE-179 [218]
LEU-181 [220]
LEU-182 [221]
ILE-183 [222]
MET-184 [223]
ILE-185 [224]
PHE-186 [225]
VAL-187 [226]
LEU-189 [228]
ARG-190 [229]
VAL-191 [230]
TYR-192 [231]
ARG-193 [232]
GLU-194 [233]
LYS-196 [235]
GLU-197 [236]
GLN-198 [237]
ILE-199 [238]
ARG-200 [284]
GLU-201 [285]
HIS-202 [286]
LYS-203 [287]
LEU-205 [289]
LYS-206 [290]
THR-207 [291]
LEU-208 [292]
ILE-210 [294]
ILE-211 [295]
MET-212 [296]
VAL-214 [298]
PHE-215 [299]
THR-216 [300]
LEU-217 [301]
CYS-218 [302]
TRP-219 [303]
LEU-220 [304]
PHE-222 [306]
PHE-223 [307]
LEU-224 [308]
VAL-225 [309]
ASN-226 [310]
ILE-227 [311]
VAL-228 [312]
ASN-229 [313]
VAL-230 [314]
PHE-231 [315]
ASN-232 [316]
ARG-233 [317]
ASP-234 [318]
LEU-235 [319]
VAL-236 [320]
ASP-238 [322]
TRP-239 [323]
LEU-240 [324]
PHE-241 [325]
VAL-242 [326]
PHE-244 [328]
ASN-245 [329]
TRP-246 [330]
LEU-247 [331]
TYR-249 [333]
ASN-251 [335]
SER-252 [336]
MET-254 [338]
ASN-255 [339]
ILE-257 [341]
ILE-258 [342]
TYR-259 [343]
CYS-260 [344]
ARG-261 [345]
SER-262 [346]
ASP-264 [348]
PHE-265 [349]
ARG-266 [350]
LYS-267 [351]
PHE-269 [353]
LYS-270 [354]
ARG-271 [355]
LEU-272 [356]
LEU-273 [357]