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Overly Technical Posts about Proteins and Biology
Saturday, October 25, 2014 ::
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Notes for Systems Biology
Sunday, June 8, 2014 ::
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Bioinformatics and Human Origins
Monday, May 26, 2014 ::
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Surface Area and Volume Tools for PDB files, written in easy to read Python
Thursday, May 22, 2014 ::
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Structural alignment done right
Thursday, May 22, 2014 ::
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RMSD: Root Mean Square Deviation
Thursday, May 22, 2014 ::
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Calculating the Solvent Accessible Surface-Area
Monday, April 22, 2013 ::
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Installing TPP 4.6.2 on Mountain Lion Mac OSX
Monday, January 21, 2013 ::
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Vector Representation in Structural Biology
Tuesday, December 27, 2011 ::
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A Fundamental Breakthrough in Protein Folding
Tuesday, December 13, 2011 ::
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Magic Numbers and unit conversions in Structural Biology
Tuesday, November 15, 2011 ::
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The infidelity of the theoretical protein backbone
Monday, August 1, 2011 ::
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The GPCR-G complex: the canonical structure of Cell Signaling (with interactive guide)
Saturday, May 28, 2011 ::
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Purity in the atomic force-fields of molecular dynamics simulations
Wednesday, April 27, 2011 ::
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Multiple Widget Embedding for Jolecule
Sunday, March 6, 2011 ::
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WebGL makes inroads into the browser for the foot soldiers of Biochemisty
Thursday, February 24, 2011 ::
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Jolecule widgets for your embedding pleasure!
Thursday, September 23, 2010 ::
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Jolecule Example: RNase
Saturday, September 11, 2010 ::
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Heating Water in Molecular Dynamics
Friday, September 10, 2010 ::
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HTML5 mojo: JOLECULE, a javascript protein viewer that runs on the web
Wednesday, July 28, 2010 ::
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Why bioinformatics !== compstructbio, or why Rosetta is not a glorified SVM
Sunday, July 11, 2010 ::
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The 2 billion dollar protein sequencing error
Sunday, May 30, 2010 ::
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The Theory of Single Domain Allostery
Saturday, March 20, 2010 ::
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How the hell do I model this thing?
Monday, January 4, 2010 ::
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A Decade in Computational Structural Biology
Sunday, October 25, 2009 ::
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The bioinformatic-journal/software hydrid
Sunday, July 12, 2009 ::
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Heat a residue in a protein, large loops pop out
Saturday, May 23, 2009 ::
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Thousands of hours of Molecular Dynamics saves you minutes of a Monte Carlo calculation
Tuesday, May 12, 2009 ::
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Bionostalgia: Notes to an Even Younger Computational Biologist
Wednesday, March 4, 2009 ::
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Bioinformatics in the Near Concurrent Future
Wednesday, February 25, 2009 ::
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An Annotated History of Molecular Dynamics
Monday, February 9, 2009 ::
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How efficient is Molecular Dynamics?
Monday, October 13, 2008 ::
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How the Serpin protein traps the digestive powers of the enzyme Serine Protease
Wednesday, September 24, 2008 ::
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How to Compute Chemistry, Conference Report
Thursday, March 13, 2008 ::
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How to build a cathedral door out of 456 proteins
Thursday, February 7, 2008 ::
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How to avoid futility: a guide to parameterizing non-standard amino acids in AMBER
Monday, October 1, 2007 ::
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Parsing PDB files: sometimes you really should reinvent the wheel
Sunday, August 12, 2007 ::
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A Most Ugly Hack: translating from CHARMM to AMBER trajectories
Friday, August 10, 2007 ::
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Fetching PDB files remotely in pure Python code
Wednesday, May 9, 2007 ::
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Wet Holes in the Membrane
Wednesday, May 9, 2007 ::
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The Schrodinger Equation in Action
Tuesday, May 8, 2007 ::
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Seeing a carbon-monoxide molecule escaping from the clutches of the Myoglobin protein
Wednesday, March 21, 2007 ::
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A Sign, a Flipped Structure, and a Scientific Flameout of Epic Proportions
Tuesday, March 13, 2007 ::
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Notes to a young computational biologist
Sunday, February 11, 2007 ::
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Heating up a Protein, One residue at a time
Sunday, December 31, 2006 ::
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Come together, electrostatically, as one
Saturday, December 30, 2006 ::
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Looking at the surface of a membrane
Saturday, September 23, 2006 ::
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Structural features of the Beta-sheet
Monday, August 7, 2006 ::
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The Mysterious Regions of the Ramachandran Plot
Wednesday, October 5, 2005 ::
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Of proteins, clusters and musical chairs
Saturday, September 24, 2005 ::
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Transcription as Compilation
Saturday, June 12, 2004 ::
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We can fold it for you wholesale
Monday, May 10, 2004 ::
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The Ten Commandments of Protein Folding